HL_5JUP_116

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

5JUP|1|EC|G|6865, 5JUP|1|EC|C|6866

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUP_116 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3183

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5JUP|1|EC|G|6862
5JUP|1|EC|C|6863
5JUP|1|EC|A|6864
5JUP|1|EC|G|6865
5JUP|1|EC|C|6866
5JUP|1|EC|C|6867
5JUP|1|EC|C|6868

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain WB

eS25 (yeast S25)