HL_5JUP_118

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUUGC

Length

6 nucleotides

Bulged bases

5JUP|1|EC|G|6928

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUP_118 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3701

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5JUP|1|EC|G|6924
5JUP|1|EC|C|6925
5JUP|1|EC|U|6926
5JUP|1|EC|U|6927
5JUP|1|EC|G|6928
5JUP|1|EC|C|6929

Current chains

Chain EC

IRES

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain O

uL5 (yeast L11)