HL_5JUS_005

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5JUS|1|A|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_005 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.342

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5JUS|1|A|C|230
5JUS|1|A|U|231
5JUS|1|A|U|232
5JUS|1|A|C|233
5JUS|1|A|G|234
5JUS|1|A|G|235

Current chains

Chain A

18S ribosomal RNA

Nearby chains