HL_5JUS_039

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5JUS|1|B|U|133, 5JUS|1|B|C|135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_039 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.401

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5JUS|1|B|C|132
5JUS|1|B|U|133
5JUS|1|B|U|134
5JUS|1|B|C|135
5JUS|1|B|G|136

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain MA

uL29 (yeast L35)

Chain S

eL15 (yeast L15)