HL_5JUS_042
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 5JUS|1|B|G|218, 5JUS|1|B|A|219, 5JUS|1|B|G|220
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_042 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.237
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
5JUS|1|B|G|216
5JUS|1|B|U|217
5JUS|1|B|G|218
5JUS|1|B|A|219
5JUS|1|B|G|220
5JUS|1|B|A|221
5JUS|1|B|A|222
5JUS|1|B|U|223
5JUS|1|B|C|224
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
Coloring options: