HL_5JUS_057

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

5JUS|1|B|A|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_057 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1661

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5JUS|1|B|G|910
5JUS|1|B|C|911
5JUS|1|B|G|912
5JUS|1|B|A|913
5JUS|1|B|A|914
5JUS|1|B|A|915
5JUS|1|B|G|916
5JUS|1|B|A|917
5JUS|1|B|C|918

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain OA

eL37 (yeast L37)