HL_5JUS_068

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

5JUS|1|B|G|1507, 5JUS|1|B|U|1511

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUS_068 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.2368

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5JUS|1|B|A|1506
5JUS|1|B|G|1507
5JUS|1|B|C|1508
5JUS|1|B|A|1509
5JUS|1|B|G|1510
5JUS|1|B|U|1511
5JUS|1|B|U|1512

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain QA

eL39 (yeast L39)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)