HL_5JUS_097
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 5JUS|1|B|G|2777, 5JUS|1|B|U|2782
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_097 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.3308
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
5JUS|1|B|C|2776
5JUS|1|B|G|2777
5JUS|1|B|G|2778
5JUS|1|B|A|2779
5JUS|1|B|A|2780
5JUS|1|B|U|2781
5JUS|1|B|U|2782
5JUS|1|B|U|2783
5JUS|1|B|G|2784
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain NA
- eL36 (yeast L36)
- Chain Q
- eL13 (yeast L13)
- Chain TA
- eL42 (yeast L42)
Coloring options: