HL_5JUS_127
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 5JUS|1|B|G|2898
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUS_127 not in the Motif Atlas
- Homologous match to HL_8P9A_173
- Geometric discrepancy: 0.2108
- The information below is about HL_8P9A_173
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5JUS|1|B|A|2897
5JUS|1|B|G|2898
5JUS|1|B|C|2899
5JUS|1|B|A|2900
5JUS|1|B|G|2901
5JUS|1|B|A|2902
5JUS|1|B|A|2903
5JUS|1|B|U|2904
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain DC
- yeast eEF2
- Chain M
- uL6 (yeast L9)
- Chain RA
- eL40 (yeast L40)
Coloring options: