HL_5JUT_002
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAAUUUAUACAG
- Length
- 12 nucleotides
- Bulged bases
- 5JUT|1|A|U|75, 5JUT|1|A|U|77
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_002 not in the Motif Atlas
- Homologous match to HL_4V88_187
- Geometric discrepancy: 0.5541
- The information below is about HL_4V88_187
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38701.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5JUT|1|A|C|70
5JUT|1|A|A|71
5JUT|1|A|A|72
5JUT|1|A|U|73
5JUT|1|A|U|74
5JUT|1|A|U|75
5JUT|1|A|A|76
5JUT|1|A|U|77
5JUT|1|A|A|78
5JUT|1|A|C|79
5JUT|1|A|A|80
5JUT|1|A|G|81
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain DB
- eS6 (yeast S6)
Coloring options: