HL_5JUT_015

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

5JUT|1|A|G|571

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_015 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.275

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5JUT|1|A|C|569
5JUT|1|A|A|570
5JUT|1|A|G|571
5JUT|1|A|C|572
5JUT|1|A|C|573
5JUT|1|A|G|574

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain UB

uS12 (yeast S23)