HL_5JUT_018

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCGUAUUGC

Length

9 nucleotides

Bulged bases

5JUT|1|A|U|779, 5JUT|1|A|A|780, 5JUT|1|A|U|781, 5JUT|1|A|U|782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_018 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3853

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5JUT|1|A|G|776
5JUT|1|A|C|777
5JUT|1|A|G|778
5JUT|1|A|U|779
5JUT|1|A|A|780
5JUT|1|A|U|781
5JUT|1|A|U|782
5JUT|1|A|G|783
5JUT|1|A|C|784

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain VB

eS24 (yeast S24)