HL_5JUT_020

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

5JUT|1|A|U|903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_020 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1551

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5JUT|1|A|A|900
5JUT|1|A|G|901
5JUT|1|A|G|902
5JUT|1|A|U|903
5JUT|1|A|G|904
5JUT|1|A|A|905
5JUT|1|A|A|906
5JUT|1|A|A|907
5JUT|1|A|U|908
5JUT|1|A|U|909

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain EC

IRES

Chain LB

uS11 (yeast S14)