HL_5JUT_063
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- 5JUT|1|B|A|1153, 5JUT|1|B|A|1154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUT_063 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.2374
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5JUT|1|B|G|1148
5JUT|1|B|G|1149
5JUT|1|B|A|1150
5JUT|1|B|U|1151
5JUT|1|B|G|1152
5JUT|1|B|A|1153
5JUT|1|B|A|1154
5JUT|1|B|C|1155
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain JA
- eL32 (yeast L32)
- Chain K
- uL30 (yeast L7)
- Chain KA
- eL33 (yeast L33)
Coloring options: