HL_5JUT_068

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_068 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.185

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5JUT|1|B|A|1462
5JUT|1|B|U|1463
5JUT|1|B|G|1464
5JUT|1|B|A|1465
5JUT|1|B|G|1466
5JUT|1|B|A|1467
5JUT|1|B|A|1468
5JUT|1|B|C|1469
5JUT|1|B|U|1470

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain IA

eL31 (yeast L31)

Chain U

uL22 (yeast L17)

Chain W

eL19 (yeast L19)