HL_5JUT_100

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_100 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3439

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5JUT|1|B|C|2840
5JUT|1|B|G|2841
5JUT|1|B|U|2842
5JUT|1|B|U|2843
5JUT|1|B|C|2844
5JUT|1|B|A|2845
5JUT|1|B|U|2846
5JUT|1|B|A|2847
5JUT|1|B|G|2848

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain DC

yeast eEF2

Chain N

uL16 (yeast L10)

Chain RA

eL40 (yeast L40)