HL_5JUT_109

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

5JUT|1|B|U|3304

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUT_109 not in the Motif Atlas

Geometric match to HL_7RQB_057

Geometric discrepancy: 0.2415

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5JUT|1|B|G|3303
5JUT|1|B|U|3304
5JUT|1|B|A|3305
5JUT|1|B|U|3306
5JUT|1|B|A|3307
5JUT|1|B|C|3308
5JUT|1|B|G|3309
5JUT|1|B|A|3310
5JUT|1|B|C|3311

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain U

uL22 (yeast L17)