HL_5JUU_008

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

5JUU|1|A|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2196

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5JUU|1|A|G|330
5JUU|1|A|A|331
5JUU|1|A|U|332
5JUU|1|A|A|333
5JUU|1|A|G|334
5JUU|1|A|U|335
5JUU|1|A|G|336
5JUU|1|A|G|337
5JUU|1|A|C|338

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain FB

eS8 (yeast S8)

Chain IB

uS17 (yeast S11)