HL_5JUU_027

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

5JUU|1|A|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3665

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

5JUU|1|A|A|1238
5JUU|1|A|U|1239
5JUU|1|A|U|1240
5JUU|1|A|G|1241
5JUU|1|A|A|1242
5JUU|1|A|G|1243
5JUU|1|A|A|1244
5JUU|1|A|G|1245
5JUU|1|A|C|1246
5JUU|1|A|U|1247

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AC

uS14 (yeast S29)

Chain CC

eS31 (yeast S31)

Chain MB

uS19 (yeast S15)