HL_5JUU_029

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5JUU|1|A|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_029 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2023

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5JUU|1|A|C|1309
5JUU|1|A|U|1310
5JUU|1|A|U|1311
5JUU|1|A|A|1312
5JUU|1|A|A|1313
5JUU|1|A|U|1314
5JUU|1|A|U|1315
5JUU|1|A|G|1316

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain OB

eS17 (yeast S17)