HL_5JUU_030

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5JUU_030 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.4171

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5JUU|1|A|C|1359
5JUU|1|A|A|1360
5JUU|1|A|U|1361
5JUU|1|A|U|1362
5JUU|1|A|U|1363
5JUU|1|A|G|1364

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain CB

uS7 (yeast S5)

Chain NB

uS9 (yeast S16)

Chain QB

eS19 (yeast S19)