HL_5JUU_065
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_065 not in the Motif Atlas
- Homologous match to HL_8C3A_028
- Geometric discrepancy: 0.2271
- The information below is about HL_8C3A_028
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5JUU|1|B|U|1267
5JUU|1|B|G|1268
5JUU|1|B|U|1269
5JUU|1|B|A|1270
5JUU|1|B|A|1271
5JUU|1|B|C|1272
5JUU|1|B|A|1273
5JUU|1|B|A|1274
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain DC
- yeast eEF2
- Chain RA
- eL40 (yeast L40)
- Chain VA
- uL10 (yeast P0)
Coloring options: