HL_5JUU_083
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5JUU|1|B|A|2138, 5JUU|1|B|A|2139, 5JUU|1|B|U|2140, 5JUU|1|B|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5JUU_083 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.1422
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5JUU|1|B|U|2135
5JUU|1|B|C|2136
5JUU|1|B|U|2137
5JUU|1|B|A|2138
5JUU|1|B|A|2139
5JUU|1|B|U|2140
5JUU|1|B|U|2141
5JUU|1|B|A|2142
5JUU|1|B|A|2143
5JUU|1|B|A|2144
5JUU|1|B|A|2145
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain F
- uL2 (yeast L2)
- Chain OA
- eL37 (yeast L37)
Coloring options: