HL_5K0Y_003

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

5K0Y|1|A|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.232

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5K0Y|1|A|G|156
5K0Y|1|A|U|157
5K0Y|1|A|A|158
5K0Y|1|A|A|159
5K0Y|1|A|U|160
5K0Y|1|A|U|161
5K0Y|1|A|C|162

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain T

Eukaryotic translation initiation factor 3 subunit I

Chain q

40S ribosomal protein S6

Chain s

40S ribosomal protein S24