HL_5K0Y_007

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCUCCGUG

Length

8 nucleotides

Bulged bases

5K0Y|1|A|U|314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_007 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3697

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5K0Y|1|A|C|312
5K0Y|1|A|C|313
5K0Y|1|A|U|314
5K0Y|1|A|C|315
5K0Y|1|A|C|316
5K0Y|1|A|G|317
5K0Y|1|A|U|318
5K0Y|1|A|G|319

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain q

40S ribosomal protein S6