HL_5K0Y_010
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 5K0Y|1|A|C|440, 5K0Y|1|A|G|441
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_010 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1508
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|C|431
5K0Y|1|A|C|432
5K0Y|1|A|U|433
5K0Y|1|A|G|434
5K0Y|1|A|A|435
5K0Y|1|A|G|436
5K0Y|1|A|A|437
5K0Y|1|A|A|438
5K0Y|1|A|A|439
5K0Y|1|A|C|440
5K0Y|1|A|G|441
5K0Y|1|A|G|442
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4
- Chain o
- 40S ribosomal protein S8
- Chain q
- 40S ribosomal protein S6
- Chain s
- 40S ribosomal protein S24
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