HL_5K0Y_012

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

5K0Y|1|A|A|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3305

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5K0Y|1|A|C|488
5K0Y|1|A|G|489
5K0Y|1|A|A|490
5K0Y|1|A|C|491
5K0Y|1|A|C|492
5K0Y|1|A|C|493
5K0Y|1|A|G|494

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S4

Chain s

40S ribosomal protein S24