HL_5K0Y_021
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_021 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1887
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5K0Y|1|A|A|953
5K0Y|1|A|G|954
5K0Y|1|A|G|955
5K0Y|1|A|U|956
5K0Y|1|A|G|957
5K0Y|1|A|A|958
5K0Y|1|A|A|959
5K0Y|1|A|A|960
5K0Y|1|A|U|961
5K0Y|1|A|U|962
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- mRNA
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
- Chain U
- ribosomal protein uS7
- Chain j
- ribosomal protein uS11
- Chain k
- ribosomal protein eS26
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