HL_5K0Y_023
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_023 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2282
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
5K0Y|1|A|G|1050
5K0Y|1|A|A|1051
5K0Y|1|A|U|1052
5K0Y|1|A|C|1053
5K0Y|1|A|A|1054
5K0Y|1|A|G|1055
5K0Y|1|A|A|1056
5K0Y|1|A|U|1057
5K0Y|1|A|A|1058
5K0Y|1|A|C|1059
5K0Y|1|A|C|1060
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- mRNA
- Chain N
- Transfer RNA; tRNA
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
- Chain j
- ribosomal protein uS11
- Chain k
- ribosomal protein eS26
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