HL_5K0Y_028

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

5K0Y|1|A|U|1296

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5K0Y_028 not in the Motif Atlas

Geometric match to HL_4V88_206

Geometric discrepancy: 0.3426

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5K0Y|1|A|G|1290
5K0Y|1|A|A|1291
5K0Y|1|A|U|1292
5K0Y|1|A|U|1293
5K0Y|1|A|G|1294
5K0Y|1|A|A|1295
5K0Y|1|A|U|1296
5K0Y|1|A|A|1297
5K0Y|1|A|G|1298
5K0Y|1|A|C|1299
5K0Y|1|A|U|1300
5K0Y|1|A|C|1301

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein uS14

Chain n

ribosomal protein uS19

Chain p

ribosomal protein eS31