HL_5K0Y_034
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 5K0Y|1|A|A|1618
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5K0Y_034 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2944
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5K0Y|1|A|A|1609
5K0Y|1|A|U|1610
5K0Y|1|A|U|1611
5K0Y|1|A|G|1612
5K0Y|1|A|C|1613
5K0Y|1|A|A|1614
5K0Y|1|A|A|1615
5K0Y|1|A|U|1616
5K0Y|1|A|U|1617
5K0Y|1|A|A|1618
5K0Y|1|A|U|1619
5K0Y|1|A|U|1620
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein uS14
- Chain L
- ribosomal protein uS13
- Chain R
- ribosomal protein eS19
- Chain n
- ribosomal protein uS19
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