HL_5KCR_036

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5KCR|1|1A|A|1453, 5KCR|1|1A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0585

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KCR|1|1A|C|1451
5KCR|1|1A|G|1452
5KCR|1|1A|A|1453
5KCR|1|1A|C|1454
5KCR|1|1A|G|1455
5KCR|1|1A|G|1456
5KCR|1|1A|U|1457
5KCR|1|1A|U|1458
5KCR|1|1A|G|1459

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17