HL_5KCR_048
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- G(PSU)AAC(PSU)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 5KCR|1|1A|A|1913, 5KCR|1|1A|C|1914, 5KCR|1|1A|A|1916
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KCR_048 not in the Motif Atlas
- Homologous match to HL_5J7L_181
- Geometric discrepancy: 0.0572
- The information below is about HL_5J7L_181
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5KCR|1|1A|G|1910
5KCR|1|1A|PSU|1911
5KCR|1|1A|A|1912
5KCR|1|1A|A|1913
5KCR|1|1A|C|1914
5KCR|1|1A|PSU|1915
5KCR|1|1A|A|1916
5KCR|1|1A|PSU|1917
5KCR|1|1A|A|1918
5KCR|1|1A|A|1919
5KCR|1|1A|C|1920
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1x
- Transfer RNA; tRNA
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