HL_5KCR_054

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5KCR|1|1A|A|2268, 5KCR|1|1A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_054 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0453

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5KCR|1|1A|C|2264
5KCR|1|1A|U|2265
5KCR|1|1A|A|2266
5KCR|1|1A|A|2267
5KCR|1|1A|A|2268
5KCR|1|1A|G|2269
5KCR|1|1A|A|2270
5KCR|1|1A|G|2271
5KCR|1|1A|U|2272
5KCR|1|1A|A|2273
5KCR|1|1A|A|2274
5KCR|1|1A|C|2275
5KCR|1|1A|G|2276

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1Q

50S ribosomal protein L16