HL_5KCR_066

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5KCR|1|1A|G|2751, 5KCR|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0361

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|C|2745
5KCR|1|1A|U|2746
5KCR|1|1A|G|2747
5KCR|1|1A|A|2748
5KCR|1|1A|A|2749
5KCR|1|1A|A|2750
5KCR|1|1A|G|2751
5KCR|1|1A|C|2752
5KCR|1|1A|A|2753
5KCR|1|1A|U|2754
5KCR|1|1A|C|2755
5KCR|1|1A|U|2756
5KCR|1|1A|A|2757
5KCR|1|1A|A|2758
5KCR|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13