HL_5KCR_077

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5KCR|1|1a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_077 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1138

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KCR|1|1a|G|259
5KCR|1|1a|G|260
5KCR|1|1a|U|261
5KCR|1|1a|A|262
5KCR|1|1a|A|263
5KCR|1|1a|C|264
5KCR|1|1a|G|265
5KCR|1|1a|G|266
5KCR|1|1a|C|267

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20