HL_5KCR_085

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCR_085 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1163

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KCR|1|1a|G|617
5KCR|1|1a|C|618
5KCR|1|1a|U|619
5KCR|1|1a|C|620
5KCR|1|1a|A|621
5KCR|1|1a|A|622
5KCR|1|1a|C|623

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1p

30S ribosomal protein S16