HL_5KCR_112
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCCAAUAGGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KCR_112 not in the Motif Atlas
- Homologous match to HL_4WSM_251
- Geometric discrepancy: 0.387
- The information below is about HL_4WSM_251
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5KCR|1|1x|C|47
5KCR|1|1x|C|48
5KCR|1|1x|C|49
5KCR|1|1x|A|50
5KCR|1|1x|A|51
5KCR|1|1x|U|52
5KCR|1|1x|A|53
5KCR|1|1x|G|54
5KCR|1|1x|G|55
5KCR|1|1x|G|56
Current chains
- Chain 1x
- P-site tRNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1m
- 30S ribosomal protein S13
Coloring options: