HL_5KPS_006

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5KPS|1|27|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1293

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KPS|1|27|G|259
5KPS|1|27|G|260
5KPS|1|27|U|261
5KPS|1|27|A|262
5KPS|1|27|A|263
5KPS|1|27|C|264
5KPS|1|27|G|265
5KPS|1|27|G|266
5KPS|1|27|C|267

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S17

Chain 25

30S ribosomal protein S20