HL_5KPS_007

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0989

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5KPS|1|27|U|296
5KPS|1|27|G|297
5KPS|1|27|A|298
5KPS|1|27|G|299
5KPS|1|27|A|300
5KPS|1|27|G|301

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 10

30S ribosomal protein S5

Chain 22

30S ribosomal protein S17

Chain 9

30S ribosomal protein S4