HL_5KPS_008

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0948

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPS|1|27|A|320
5KPS|1|27|A|321
5KPS|1|27|C|322
5KPS|1|27|U|323
5KPS|1|27|G|324
5KPS|1|27|A|325
5KPS|1|27|G|326
5KPS|1|27|A|327
5KPS|1|27|C|328
5KPS|1|27|A|329
5KPS|1|27|C|330
5KPS|1|27|G|331
5KPS|1|27|G|332
5KPS|1|27|U|333

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 21

30S ribosomal protein S16

Chain 25

30S ribosomal protein S20