HL_5KPS_014

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.0914

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KPS|1|27|G|617
5KPS|1|27|C|618
5KPS|1|27|U|619
5KPS|1|27|C|620
5KPS|1|27|A|621
5KPS|1|27|A|622
5KPS|1|27|C|623

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 21

30S ribosomal protein S16

Chain 9

30S ribosomal protein S4