HL_5KPS_018

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5KPS|1|27|U|842, 5KPS|1|27|G|844, 5KPS|1|27|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_018 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3238

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5KPS|1|27|C|840
5KPS|1|27|C|841
5KPS|1|27|U|842
5KPS|1|27|U|843
5KPS|1|27|G|844
5KPS|1|27|A|845
5KPS|1|27|G|846

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 23

30S ribosomal protein S18