HL_5KPS_020

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_020 not in the Motif Atlas

Homologous match to HL_5J7L_020

Geometric discrepancy: 0.1238

The information below is about HL_5J7L_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5KPS|1|27|C|897
5KPS|1|27|G|898
5KPS|1|27|C|899
5KPS|1|27|A|900
5KPS|1|27|A|901
5KPS|1|27|G|902

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain B

50S ribosomal protein L2