HL_5KPS_028

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_028 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1318

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5KPS|1|27|C|1265
5KPS|1|27|G|1266
5KPS|1|27|C|1267
5KPS|1|27|G|1268
5KPS|1|27|A|1269
5KPS|1|27|G|1270

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 18

30S ribosomal protein S13

Chain 24

30S ribosomal protein S19