HL_5KPS_057

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

5KPS|1|28|U|958, 5KPS|1|28|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_057 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2816

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5KPS|1|28|G|954
5KPS|1|28|U|955
5KPS|1|28|G|956
5KPS|1|28|C|957
5KPS|1|28|U|958
5KPS|1|28|A|959
5KPS|1|28|A|960
5KPS|1|28|C|961
5KPS|1|28|G|962
5KPS|1|28|U|963

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 29

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16