HL_5KPS_076

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

5KPS|1|28|A|1780, 5KPS|1|28|U|1781, 5KPS|1|28|U|1782, 5KPS|1|28|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_076 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.1046

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

5KPS|1|28|U|1777
5KPS|1|28|U|1778
5KPS|1|28|U|1779
5KPS|1|28|A|1780
5KPS|1|28|U|1781
5KPS|1|28|U|1782
5KPS|1|28|A|1783
5KPS|1|28|A|1784
5KPS|1|28|A|1785
5KPS|1|28|A|1786
5KPS|1|28|A|1787

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain B

50S ribosomal protein L2