HL_5KPS_091

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPS_091 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1205

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|A|2471
5KPS|1|28|G|2472
5KPS|1|28|U|2473
5KPS|1|28|U|2474
5KPS|1|28|C|2475
5KPS|1|28|A|2476
5KPS|1|28|U|2477
5KPS|1|28|A|2478
5KPS|1|28|U|2479

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain A

GTP pyrophosphokinase

Chain F

50S ribosomal protein L6