HL_5KPV_037

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_037 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1972

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPV|1|27|U|158
5KPV|1|27|G|159
5KPV|1|27|A|160
5KPV|1|27|A|161
5KPV|1|27|U|162
5KPV|1|27|C|163
5KPV|1|27|C|164
5KPV|1|27|A|165
5KPV|1|27|U|166
5KPV|1|27|A|167
5KPV|1|27|G|168

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L28