HL_5KPV_060

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_060 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2206

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5KPV|1|27|C|1092
5KPV|1|27|G|1093
5KPV|1|27|U|1094
5KPV|1|27|A|1095
5KPV|1|27|A|1096
5KPV|1|27|U|1097
5KPV|1|27|A|1098
5KPV|1|27|G|1099

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 30

Transfer RNA; tRNA

Chain H

50S ribosomal protein L11